Transgenic technology has played a pivotal role in improving key agronomic traits in crops, such as high yield, resistance to pests and diseases, and herbicide tolerance, and has been widely adopted in agricultural production. However, with the continuous expansion of genetically modified (GM) crop cultivation and the emergence of new breeding technologies like gene editing, the regulatory oversight of transgenic seeds is facing increasingly serious challenges. This article systematically reviewed the current application of detection technologies for transgenic events in major crop seeds, elucidated their underlying principles and mechanisms, and proposed a screening framework tailored to different crop species. It provided a comprehensive analysis of critical technical limitations, including low detection sensitivity, insufficient capability for simultaneous multi-target detection, and lagging development of portable devices for on-site rapid screening. Building on this assessment, future research directions were outlined, aiming to offer a theoretical foundation for strengthening the biosafety regulation of transgenic crops in seeds.