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Table of Content

    • Current Biotechnology
      Volume 9 Issue 4 25 July 2019
    • A Review: Bacterial Metal Induction and Homeostasis Regulation
    • LIU Yichao, ZHAN Yuhua, KE Xiubin, YAN Yongliang*
    • 2019, 9(4):  317-325.  DOI: 10.19586/j.2095-2341.2019.0024
    • Abstract ( ) PDF (3251KB)( )
    • Trace metal elements such as iron, manganese and zinc are indispensable for almost all bacterial species, functioning as vital cofactors in a wide variety of key metabolic processes. For example, it is difficult for bacteria to maintain normal physiological activities under conditions of iron deficiency or limitation. On the other hand, excess iron may have toxic effects on bacteria by catalyzing the formation of reactive oxygen species such as hydroxyl radicals through the Fenton reaction. Therefore, in view of the ever-changing availability of metal ions, combined with the change of the internal environment, bacteria have evolved a variety of metal ions response systems and mechanisms with corresponding metal uptake regulator families as their cores. Most of these regulatory elements are global transcription factors that couple gene regulation with metal concentration and are the most important regulators of metal metabolism in bacteria. In this paper, the classic mode of metal ions homeostasis regulation was introduced; the iron balance and transportation under different internal and external conditions were also explained in detail. Meanwhile, three types of metal-sensing regulators were summarized according to several typical metal elements intracellular homeostasis, which provided a certain reference for further studies focusing on metal sensors and metal homeostasis of other bacteria or microorganisms.
    • Progress on Hypoxia-inducible Factor and its Inhibitors
    • YAN Dongke*, LYU Ping*
    • 2019, 9(4):  332-340.  DOI: 10.19586/j.2095-2341.2019.0027
    • Abstract ( ) PDF (3666KB)( )
    • Hypoxia is a common physiological and pathological phenomenon in vivo and a common microenvironment of solid tumors. There are a series of regulation mechanisms in humans and other mammals to deal with hypoxia stress. And hypoxia-inducible factors (HIFs) are the key regulators of these regulation mechanisms, and they are a family of transcription factors involved in cellular hypoxia response. Extensive studies have shown that HIFs are closely related to growth and development of organisms, angiogenesis, erythropoiesis, cell metabolism and autophagy, and occurrence, development, metastasis and invasion, radiochemotherapy resistance of tumor as well as poor prognosis of cancer patients. Therefore, it is of great significance to further strengthen the research on HIFs and their inhibitors for the understanding and treatment of tumors. The progress of protein structure, stability regulation, transcriptional activation regulation and targeted inhibitors of HIFs was reviewed, in order to provide new insights in HIFs targeted tumor therapy and offer references for the research and development of new HIFs inhibitors.
    • Cloning, Modification and Functional Characterization of Maize PHYB1 in Arabidopsis thaliana
    • MA Xiaojing1,2, ZHAO Binbin1,2, LIU Yang1, MA Mengdi1, WANG Haiyang3*
    • 2019, 9(4):  350-356.  DOI: 10.19586/j.2095-2341.2019.0039
    • Abstract ( ) PDF (4493KB)( )
    • As an important environmental factor, light affects many aspects of plant growth and development. Plants use several classes of photoreceptors to perceive the light signals in the ambient environment. Among the photoreceptors, phytochromes, which sense red and far-red light signals, are best studied so far. Previous studies have shown that changing the tyrosine (Y) at position 104 and 361 of Arabidopsis phyB to phenylalanine (F) can enhance its activity. To investigate the function of maize phytochrome B1, we constructed three binary vectors: Wild type pZmPHYB1∷ZmPHYB1WT, pZmPHYB1∷ZmPHYB1Y98F (mimicking Y104F of Arabidopsis phyB) and pZmPHYB1∷ZmPHYB1Y359F (mimicking Y361F of Arabidopsis phyB), and transformed them into the Arabidopsis phyB-9 loss-of-function mutant. Phenotypic analyses of the transgenic lines showed that the maize PHYB1 gene can largely complement the Arabidopsis phyB-9 mutant phenotypes, including hypocotyl elongation and petiole elongation. Furthermore, ZmPHYB1 can physically interact with the Arabidopsis PIF5 protein and induce the expression of downstream shade avoidance responsive and auxin biosynthesis related genes. The Y98F and Y359F amino acid substitutions can enhance the activity of ZmPHYB1. In summary, our results indicated that ZmPHYB1 plays an important role in mediating shade avoidance response in Arabidopsis, and provided useful clues for genetic improvement maize plant architecture for adapting to high-density planting.
    • Genome-wide Identification of LEA3 Gene Family in Wheat (Triticum aestivum L.) and its Expression Patterns in Response to Fusarium Head Blight
    • ZHENG Tong, YUAN Minmin, HUA Chen, ZHOU Yao, LI Lei, SUN Zhengxi, LI Tao*
    • 2019, 9(4):  357-368.  DOI: 10.19586/j.2095-2341.2019.0059
    • Abstract ( ) PDF (13755KB)( )
    • Late embryogenesis abundant (LEA) proteins are a class of proteins accumulating in seeds during the late stage of embryonic development in higher plant, and they play  important roles in plant resistance to adversity stress. LEA3, the third group of the LEA proteins, is the major member of this family and has been extensively studied for its excellent performance in drought and salt tolerance in plants. In previous study, a differential accumulation protein Wrab17 (TaLEA3 gene family) associated with Fusarium head blight (FHB) resistance was screened from wheat cobs inoculated with Fusarium graminearum   by high-throughput proteomics strategy. In order to reveal the sequence characteristics of TaLEA3 gene family in wheat and its response mechanism to biological stress, bioinformatics method was used to systematically study the gene family. The results showed that a total of 26 TaLEA3 genes were present in wheat genome named TaG3LEA-1~TaG3LEA-26, which were distributed on nine chromosomes of wheat. Tandem duplication and segmental duplication were probably the main expansion ways of this gene family. And MEME analysis showed that the members of this family contained either motif 2 or motif 5, which is the typical feature of LEA3 family. Through expression profiling analysis and qRT-PCR verification, TaG3LEA-25 was highly expressed under both drought and high temperature stresses, and there was also a significant difference in FHB inoculation test, suggesting that it might be involved in FHB resistance. The results of this study provided valuable information for elucidation of the evolutionary relationships of TaLEA3 gene family in wheat and laid a theoretical foundation for further exploration of their functional mechanisms.
    • Establishment of a Germ-free Zebrafish Model for Spring Viraemia of Carp Virus Infection
    • XIE Yadong, XIE Mingxu, LI Jie, WANG Anran, YANG Peilong, RAN Chao, ZHOU Zhigang*
    • 2019, 9(4):  369-374.  DOI: 10.19586/j.2095-2341.2019.0020
    • Abstract ( ) PDF (1992KB)( )
    • Virus diseases cause serious damages to Chinese aquaculture industry, but there is no effective countermeasure yet. Recent studies have confirmed the involvement of intestinal microflora in the interaction between host and viruses. However, there are rare related studies on fish. Germ-free (GF) animal infection model is the prerequisite for investigation of intestinal microflora-related functions. Based on this, a stable and reliable GF zebrafish model for spring viraemia of carp virus (SVCV) infection was established. Further, this model was used to investigate the influence of intestinal microflora and 3 strains of representative commensal intestinal bacteria, including Cetobacterium somerae, Aeromonas veronii and Plesimonas shigelloides, on viral infection in zebrafish. The results showed that there was no significant influence of intestinal microflora or commensal bacteria on SVCV infection after bacteria colonizing the intestinal tract of fish over 24 h. The establishment of a GF zebrafish model for SVCV infection provided a new way for rapidly screening the bacterial strains which could affect virus infection. The study also provided a possibility for further identification of the antiviral effectors derived from commensal bacteria of fish.
    • Gene Cloning and Bioinformatics Analysis of Secret Protease Gene from Thelohanellus kitauei
    • ZHANG Fengli1, YANG Yalin1*, XIA Rui1, GAO Chenchen1, LI Dong1, RAN Chao1, ZHANG Zhen2, ZHANG Hongling2, ZHOU Zhigang2*
    • 2019, 9(4):  375-383.  DOI: 10.19586/j.2095-2341.2019.0018
    • Abstract ( ) PDF (4896KB)( )
    • Myxosporea are the common parasites of fish, which causing serious loss in fish production. The role of Myxosporea proteases and inhibitors in affecting their invasion and infection is increasingly reported. Based on the early transcriptome data of Myxosporea Thelohanellus kitauei, three highly expressed secret protease genes, TK Papain-1, TK Papain-2 and TK Pepsin, were successfully cloned. Using bioinformatics analysis, TK Papain-1 and TK Papain-2 are member of the papain (C1A) family, which encodes cysteine proteases. These two protease genes encoding 150 and 322 amino acids and the protein sizes are 17.06 kDa and 36.7 kDa respectively. TK pepsin encodes aspartic proteases. This gene encodes a total of 491 amino acids and the protein size is 55.41 kDa. All the proteases have signal peptide sequences, which are secret protease; through the construction of phylogenetic trees, we found that the amino acid sequence of those proteases were similar with homologous sequences of Nematostella vectensis, Hydra vulgar and Pseudocohnilembus persalinus. Moreover, using multiple sequence alignment, the conserved sites of those secretors of protease and the protein corresponding to the predicted size was obtained by heterologous expression. This study provided a basis for further research on the Myxosporium protease properties, and infection mechanism.
    • Isolating, Screening and Identification Involved in 2,4-D Degradation
    • LI Xuyang, HUANG Liling, GUO Qiannan, GAO Ruyu, ZHANG Wei, CHEN Ming, LU Wei, ZHOU Zhengfu*
    • 2019, 9(4):  384-395.  DOI: 10.19586/j.2095-2341.2019.0025
    • Abstract ( ) PDF (4663KB)( )
    • 2,4-dichlorophenoxyacetic acid (2,4-D) is a systemic and broad-spectrum foliar herbicide which can control  broadleaf weeds. But because of its frequent use, 2,4-D has resulted in considerable pollution to water and soil and thus threatened the ecological environment and human health. In this paper, 85 strains were isolated and screened from 2,4-D contaminated soil samples (inorganic salt medium with 2,4-D as the sole carbon source) by enrichment culture. 16S rDNA analysis showed that it belongs to Pseudomonas, Bacillus, Lysinibacillus, Paenibacillus, Brevibacillus, Serratia, Methylobacterium, Cupriavidus, Rhodococcus, Larender (Rahnella), Staphylococcus, Enterobacter and Mycobacterium. The strain herbicide tolerance test showed that Pseudomonas can tolerate a higher concentration of 2,4-D with a maximum tolerated concentration of 8 g/L. Some strains were selected to be cultured with 2,4-D as the sole carbon source. The degradation ability of the strain was determined by detecting 2,4-D degradation products (4-aminoantipyrine colorimetric measurement and high performance liquid chromatography), the LC/MS and LC-QTOF were used to detected its metabolites. A total of 11 strains were identified with highly 2,4-D degradation ability. The utilization rate of L1, L2, L4 and L6 cultured for 72 h was 17.3%, 28.07%, 38.97% and 49.02% respectively. The preliminary analysis and structural prediction of the metabolites of the above selected strains were carried out by LC/MS and LC-QTOF. The results showed that a total of 4 strains could convert 2,4-D de-chained groups into phenolic substances, presumably the product was 2,4-dichlorophenol (2,4-DCP).
    • Analysis of Microbial Community Structure and Diversity in Waterborne Coatings
    • MA Yongkai1, TAO Hongbing1,2, LI Wenru1, XIE Xiaobao1*, SHI Qingshan1, ZHOU Shaolu1
    • 2019, 9(4):  396-403.  DOI: 10.19586/j.2095-2341.2018.0135
    • Abstract ( ) PDF (7342KB)( )
    • With the rapid development of Chinese coatings industry, waterborne coating demand is increasing. However, analysis of microbial community structure and diversity in waterborne coatings was hardly seen. Therefore, four different kinds of waterborne coatings samples (YH4, XJ1, XJ2 and YH3) provided by a manufacturer in Guangdong province were taken as research objects, and 16S rRNA high-throughput sequencing technology was used to detect and analyze their microbial community structure and diversity. The results showed that a total of 171 822 effective tags were obtained from waterborne coatings samples, including 30 phyla, 66 classes, 98 orders, 174 families and 340 genera of bacteria. Classification tree and relative abundance analysis illustrated that the dominant microbial bacteria at phylum level in waterborne coatings were Proteobacteria, Firmicutes and Bacteroidetes, and among them, relative abundance of Proteobacteria in YH4, XJ1, XJ2 and YH3 were 97.75%, 62.53%, 99.76% and 75.80%, respectively. Beta diversity analysis showed that the microbial community structure of YH4 and XJ2 was relatively similar. This study analyzed the microbial community structure, relative abundance and diversity in waterborne coatings, and provided scientific reference for the establishment and improvement of microbial control system for waterborne coatings.
    • Study on the Technology of Solid-state Fermentation of Flammulina velutipes Residue and Vinegar Residue
    • FEI Fan1, FENG Weiwei1, MAO Guanghua1, ZHANG Weijie2, DING Yangyang1, ZHAO Ting3, WU Xiangyang1*
    • 2019, 9(4):  422-429.  DOI: 10.19586/j.2095-2341.2019.0023
    • Abstract ( ) PDF (1231KB)( )
    • In order to explore the resource utilization of two kinds of agricultural wastes, Flammulina velutipes residue and vinegar residue, they were fermented using solid-state fermentation method. The optimal mode and composition of bacteria species for solid-state fermentation were investigated via single and multi-bacteria fermentation experiments, and the optimal material ratio and fermentation time were also explored. The fermentation temperature, inoculation quantity and pH were optimized by single factor experiment, and on this basis the three factors and three levels orthogonal experiment was designed to further optimize the fermentation process. The results showed that the best fermentation mode for solid fermentation of Flammulina velutipes residue and vinegar residue was multi-bacteria fermentation, in which the ratio of Bacillus subtilis∶Phanerochaete chrysosporium∶Candida tropicalis was 1∶1∶1.  And the ratio of Flammulina velutipes residue and vinegar residue was 7∶3, the crude protein content reached its peak after fermentation for 3 d. The optimum fermentation conditions were obtained by single factor experiment and orthogonal experiment, which was fermentation temperature 26℃, inoculation quantity 7% and pH 7.5. Under this condition, the fermentation lasted 3 d, the crude protein content of the fermentation product was 17.90%. The results of this study provided a new approach for the efficient resource utilization of agricultural waste resources.