Exploration and Utilization of the Excellent Characteristics and Favorable Genes of Yunnan Common Wild Rice(Oryza rufipogon Griff.) in the Past 40 Years

doi:10.19586/j.2095-2341.2024.0119

Current Biotechnology ›› 2024, Vol. 14 ›› Issue (5): 724-737.DOI: 10.19586/j.2095-2341.2024.0119

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Exploration and Utilization of the Excellent Characteristics and Favorable Genes of Yunnan Common Wild Rice(Oryza rufipogon Griff.) in the Past 40 Years

Hao JIANG¹^,²(), Hesheng YANG³, Bo WANG², Zaiquan CHENG², Huanzhi MENG³, Jiyun ZHOU³, Yun ZHANG², Suqin XIAO², Li LIU², Fuyou YIN², Qiaofang ZHONG², Jinlu LI², Dunyu ZHANG², Ling CHEN²()

^1.Institute of Resource Plant Research，Yunnan University，Kunming 650504，China
^2.Key Laboratory of Agricultural Technology of Yunnan Province； Key Laboratory of Southwest Crop Genetic Resources and Germplasm Creation，Ministry of Agriculture，Institute of Biotechnology and Germplasm Resources，Yunnan Academy of Agricultural Sciences，Kunming 650223，China
^3.Luliang County Seed Management Station of Qujing City，Yunnan Qujing 655600，China

Received:2024-06-27 Accepted:2024-08-13 Online:2024-09-25 Published:2024-10-22
Contact: Ling CHEN

近40年云南普通野生稻优异特性及有利基因的发掘与利用

姜浩¹^,²(), 杨和生³, 王波², 程在全², 孟焕芝³, 周吉云³, 张云², 肖素勤², 刘丽², 殷富有², 钟巧芳², 李金璐², 张敦宇², 陈玲²()

^1.云南大学资源植物研究院，昆明 650504
^2.云南省农业科学院生物技术与种质资源研究所，云南省农业技术重点实验室；农业部西南作物基因资源与种质创制重点实验室，昆明 650223
^3.曲靖市陆良县种子管理站，云南曲靖 655600

通讯作者: 陈玲
作者简介:姜浩 E-mail: 2361129552@qq.com
基金资助:
国家重点研发计划重点专项(2021YFD1200102-02);杨庆文专家工作站项目(202305AF150161);云南省农业联合专项-重点项目(202301BD070001-149);云南省基础研究专项面上项目(202301AT070165);中央引导地方科技发展资金(202207AB110012);云南省科技人才与平台计划项目高原野生稻云南省野外科学观测研究站(202205AM340037);云南省农业科学院科研预研项目(2023KYZX-09);国家高原野生稻种质资源圃（昆明）

Abstract

Abstract:

Rice seed resource is the material base of cultivated breeding， and it is also an important object to study the origin， evolution， development and gene function of cultivated rice. Among many wild rice varieties， Oryza rufipogon has the closest relationship with cultivated rice. They are excellent gene donors for new varieties breeding of Oryza sativa. It is very important to understand its genetic background. Targeting Oryza rufipogon in Yunnan as the object， progress its genetic background and the application of its favorable genes were summarized and analyzed. First， the excellent characteristics of the Oryza rufipogon from Yunnan in recent years were reviewed in detail. And this article clarified the fine characters of the Oryza rufipogon in Yunnan. Second， the current exploration status of the favorable gene of Oryza rufipogon in Yunnan was summarized， and the important functional genes that were unearthed at present were summarized. Third， a summary of the achievements were made in the creation of new germplasm by the excellent characteristics of the Oryza rufipogon in Yunnan. It included the breeding of Dian Type 9 indica sterile line， and a large number of breeding intermediate materials. In the end， according to the research of Oryza rufipogon in Yunnan development advantages and problems， the focus of future research and suggestion of exploring and utilizing favorable genes were presented， and the potential of Yunnan wild rice resource utilization were discussed， in order to provide theoretical support for further research， development， and utilization of Yunnan's common wild rice.

Key words: common wild rice, excellent characteristics, gene exploitation, germplasm development

摘要：

稻种资源是栽培稻育种的物质基础，也是研究栽培稻起源、进化、发育和基因功能的重要对象。在众多野生稻中，普通野生稻与栽培稻亲缘关系最近，是培育栽培稻新品种的优异基因供体，因此了解清楚其遗传背景尤为重要。以云南普通野生稻为对象，对其遗传背景的研究和有利基因的运用进行总结和分析，首先详细梳理了近年来从云南普通野生稻资源中发掘出的优异特性，阐述了其各种优良性状；其次系统总结了云南普通野生稻有利基因的发掘现状，囊括了目前从中发掘出来的重要功能基因；然后综述了云南普通野生稻优异特性在创制新种质方面所取得的成就，包括滇9型籼型不育系的育成及大量育种中间材料的获得；最后针对云南普通野生稻开发研究的优势和存在的问题，提出今后的研究重点以及有利基因发掘利用的建议，并对其利用的潜力进行了展望，以期为云南普通野生稻的进一步研究、开发和利用提供理论支持。

关键词: 普通野生稻, 优异特性, 基因发掘, 种质创新

CLC Number:

S511.9

Hao JIANG, Hesheng YANG, Bo WANG, Zaiquan CHENG, Huanzhi MENG, Jiyun ZHOU, Yun ZHANG, Suqin XIAO, Li LIU, Fuyou YIN, Qiaofang ZHONG, Jinlu LI, Dunyu ZHANG, Ling CHEN. Exploration and Utilization of the Excellent Characteristics and Favorable Genes of Yunnan Common Wild Rice(Oryza rufipogon Griff.) in the Past 40 Years[J]. Current Biotechnology, 2024, 14(5): 724-737.

姜浩, 杨和生, 王波, 程在全, 孟焕芝, 周吉云, 张云, 肖素勤, 刘丽, 殷富有, 钟巧芳, 李金璐, 张敦宇, 陈玲. 近40年云南普通野生稻优异特性及有利基因的发掘与利用[J]. 生物技术进展, 2024, 14(5): 724-737.

Figures/Tables 6

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控制性状	杂交组合	等位基因为正效的QTL数量		参考文献
控制性状	杂交组合	普通野生稻	栽培稻	参考文献
苗期耐热	元江普通野生稻/特青	4	1	[37]
抽穗扬花期耐热	元江普通野生稻/特青	1	1	[7]
抽穗扬花期耐热	元江普通野生稻/蜀恢527	1	0	[38]
苗期耐低氮	元江普通野生稻/特青	19	17	[38-39]
全生育期耐低氮	元江普通野生稻/特青	17	5	[39]
芽期耐铝	元江普通野生稻/特青	7	2	[40]
苗期耐铝	元江普通野生稻/特青	31	36	[40-41]
苗期耐盐	元江普通野生稻/特青	13	2	[42]

控制性状	杂交组合	等位基因为正效的QTL数量		参考文献
控制性状	杂交组合	普通野生稻	栽培稻	参考文献
苗期耐热	元江普通野生稻/特青	4	1	[37]
抽穗扬花期耐热	元江普通野生稻/特青	1	1	[7]
抽穗扬花期耐热	元江普通野生稻/蜀恢527	1	0	[38]
苗期耐低氮	元江普通野生稻/特青	19	17	[38-39]
全生育期耐低氮	元江普通野生稻/特青	17	5	[39]
芽期耐铝	元江普通野生稻/特青	7	2	[40]
苗期耐铝	元江普通野生稻/特青	31	36	[40-41]
苗期耐盐	元江普通野生稻/特青	13	2	[42]

基因名称	控制性状	染色体	连锁标记	贡献率/%	加性效应值/%	参考文献
qHTS1-1	苗期耐热	1	RM23、RM5	14.63	0.8	[37]
qHT1	抽穗开花期耐热	1	RM499、RM1320	12	9.13	[7]
qHTH5	抽穗扬花期耐热	5	RM592	—	5.2	[38]
qHTH5	抽穗扬花期耐热	5	RM17921	—	11.3	[38]
qLNT7-2	苗期耐低氮	7	RM172	10	13.94	[43]
qRSW9-1	苗期耐低氮	9	RM105	13	12.34	[39]
qRRW9-2	苗期耐低氮	9	RM201	10	13.20	[39]
qRPW9-1	苗期耐低氮	9	RM105	12	13.45	[39]
qRPW9-2	苗期耐低氮	9	RM201	10	7.65	[39]
qRPh7	全生育期耐低氮	7	RM5344	12	3.28	[39]
qRPp8	全生育期耐低氮	8	RM339	16	4.47	[39]
qRPs3	全生育期耐低氮	3	RM6480	16	21.64	[39]
qRGy1	全生育期耐低氮	1	—	14	—	[39]
qRGy12	全生育期耐低氮	12	RM453	15	—	[39]
qGIR9-1	芽期耐铝	9	RM219	12	5.9	[40]
qDWIR6	苗期耐铝	6	RM340	21	35.81	[40]
qPHIR10	苗期耐铝	10	RM467	10	7.67	[40]
qCR12-3	苗期耐铝	12	RM277	11	14.79	[40]
qPHIR3	苗期耐铝	3	RM231	10	3.79	[41]
qPHIR9	苗期耐铝	9	RM296	11	4.82	[41]
qSTS1	苗期耐盐	1	RM243	11	0.69	[42]
qSTS7	苗期耐盐	7	RM10	10	0.44	[42]
qRRW6	苗期耐盐	6	RM276	17	33	[42]
qRRW7	苗期耐盐	7	RM560	22	22.3	[42]
qRRW10	苗期耐盐	10	RM271	26	22.7	[42]
qRSW7	苗期耐盐	7	RM560	11	14.1	[42]
qRSW10	苗期耐盐	10	RM271	19	17.3	[42]
qRTW6	苗期耐盐	6	RM276	11	22.8	[42]
qRTW7	苗期耐盐	7	RM560	14	15.8	[42]
qRTW10	苗期耐盐	10	RM271	22	18.5	[42]

基因名称	控制性状	染色体	连锁标记	贡献率/%	加性效应值/%	参考文献
qHTS1-1	苗期耐热	1	RM23、RM5	14.63	0.8	[37]
qHT1	抽穗开花期耐热	1	RM499、RM1320	12	9.13	[7]
qHTH5	抽穗扬花期耐热	5	RM592	—	5.2	[38]
qHTH5	抽穗扬花期耐热	5	RM17921	—	11.3	[38]
qLNT7-2	苗期耐低氮	7	RM172	10	13.94	[43]
qRSW9-1	苗期耐低氮	9	RM105	13	12.34	[39]
qRRW9-2	苗期耐低氮	9	RM201	10	13.20	[39]
qRPW9-1	苗期耐低氮	9	RM105	12	13.45	[39]
qRPW9-2	苗期耐低氮	9	RM201	10	7.65	[39]
qRPh7	全生育期耐低氮	7	RM5344	12	3.28	[39]
qRPp8	全生育期耐低氮	8	RM339	16	4.47	[39]
qRPs3	全生育期耐低氮	3	RM6480	16	21.64	[39]
qRGy1	全生育期耐低氮	1	—	14	—	[39]
qRGy12	全生育期耐低氮	12	RM453	15	—	[39]
qGIR9-1	芽期耐铝	9	RM219	12	5.9	[40]
qDWIR6	苗期耐铝	6	RM340	21	35.81	[40]
qPHIR10	苗期耐铝	10	RM467	10	7.67	[40]
qCR12-3	苗期耐铝	12	RM277	11	14.79	[40]
qPHIR3	苗期耐铝	3	RM231	10	3.79	[41]
qPHIR9	苗期耐铝	9	RM296	11	4.82	[41]
qSTS1	苗期耐盐	1	RM243	11	0.69	[42]
qSTS7	苗期耐盐	7	RM10	10	0.44	[42]
qRRW6	苗期耐盐	6	RM276	17	33	[42]
qRRW7	苗期耐盐	7	RM560	22	22.3	[42]
qRRW10	苗期耐盐	10	RM271	26	22.7	[42]
qRSW7	苗期耐盐	7	RM560	11	14.1	[42]
qRSW10	苗期耐盐	10	RM271	19	17.3	[42]
qRTW6	苗期耐盐	6	RM276	11	22.8	[42]
qRTW7	苗期耐盐	7	RM560	14	15.8	[42]
qRTW10	苗期耐盐	10	RM271	22	18.5	[42]

农艺性状	杂交组合	等位基因为正效的QTL数量		参考文献
农艺性状	杂交组合	普通野生稻	栽培稻	参考文献
株高	元江普通野生稻/特青	18	1	[3,6,44-46]
剑叶长	元江普通野生稻/特青	6	2	[44]
剑叶宽	元江普通野生稻/特青	1	6	[44]
剑叶长宽比	元江普通野生稻/特青	4	0	[44]
分蘖数	元江普通野生稻/特青	4	1	[44]
抽穗期	元江普通野生稻/特青	4	2	[44]
单株有效穗	元江普通野生稻/特青	20	12	[6,44-46]
单株有效穗	元江普通野生稻/9311	5	0	[8]
每穗粒数	元江普通野生稻/特青	9	17	[6,44-46]
每穗粒数	元江普通野生稻/9311	1	2	[8]
每穗实粒数	元江普通野生稻/特青	10	15	[6,44-46]
每穗实粒数	元江普通野生稻/9311	2	2	[8]
结实率	元江普通野生稻/特青	5	15	[6,44-46]
结实率	元江普通野生稻/9311	0	1	[8]
穗长	元江普通野生稻/特青	2	3	[44]
着粒密度	元江普通野生稻/特青	1	2	[44]
谷粒长度	元江普通野生稻/特青	4	0	[44]
谷粒宽度	元江普通野生稻/特青	2	3	[44]
谷粒长宽比	元江普通野生稻/特青	8	0	[5,6,44,46]
千粒重	元江普通野生稻/特青	9	21	[6,44-46]
千粒重	元江普通野生稻/9311	1	8	[8]
每穗粒重	元江普通野生稻/特青	5	10	[44-45]
单株产量	元江普通野生稻/特青	7	16	[6,44-46]
单株产量	元江普通野生稻/9311	1	3	[8]
穗颈大维管束	元江普通野生稻/特青	0	7	[4]
穗颈小维管束	元江普通野生稻/特青	1	4	[4]
穗一次枝梗数	元江普通野生稻/特青	1	3	[4]
穗二次枝梗数	元江普通野生稻/特青	1	3	[4]
穗颖花数	元江普通野生稻/特青	2	5	[4]
净光合速率	元江普通野生稻/特青	3	0	[45]
芒性	元江普通野生稻/特青	2	0	[46]
落粒性	元江普通野生稻/特青	3	0	[46-47]
芒长	元江普通野生稻/9311	1	0	[48]
散穗性状	元江普通野生稻/特青	1	0	[49]
匍匐茎	元江普通野生稻/特青	1	0	[50]
杂种劣势	景洪普通野生稻/特青	1	1	[51]

Exploration and Utilization of the Excellent Characteristics and Favorable Genes of Yunnan Common Wild Rice(Oryza rufipogon Griff.) in the Past 40 Years

近40年云南普通野生稻优异特性及有利基因的发掘与利用

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基因名称	控制性状	染色体	连锁标记	贡献率/%	加性效应值/%	参考文献
qPH1-1	株高	1	OSR27	10	16.34	[2]
qPH1-2	株高	1	RM212	12	17.35	[2]
qPH1-3	株高	1	RM283	27	25.62	[43]
qPH1-4	株高	1	RM104	28	26.28	[2,42,45]
qPH1-5	株高	1	RM315	11	15.95	[44]
qPH5	株高	5	RM289	17	13.03	[44]
qPH8	株高	8	RM264	23	10.55	[44]
qPH7	株高	7	RM298	31	11.13	[44]
qPH12-1	株高	12	RM277	18	8.36	[44]
qPH12-2	株高	12	RM17	22	16.45	[44]
qDTH8	抽穗期	8	RM25	13	3.76	[42,45]
qPN1	单株有效穗	1	RM1	16	4.69	[44]
qPN2-1	单株有效穗	2	RM6	12	2.78	[44]
qPN2-2	单株有效穗	2	RM263	13	4.22	[44]
qPN3	单株有效穗	3	OSR31	12	2.42	[44]
qPN4	单株有效穗	4	RM255	12	4.16	[44]
qPPL7	单株有效穗	7	RM491	20	2.77	[5]
qPN7	单株有效穗	7	RM298	30	2.88	[44]
qPN9	单株有效穗	9	RM219	19	4.32	[44]
qPPL10	单株有效穗	10	RM333	10	1.13	[5]
qSPP8	每穗粒数	8	RM152	12	19.71	[5]
qGP8-1	每穗粒数	8	RM310	11	46.71	[44]
qGP8-2	每穗粒数	8	RM337	24	100.75	[44]
qGPP3	每穗实粒数	3	RM232	10	21.06	[5]
qGPP5	每穗实粒数	5	RM3334	10	24.01	[5]
qFG8	每穗实粒数	8	RM337	23	62	[44]
qSS12	结实率	12	RM453	12	0.01	[44]
qLWR1	谷粒长宽比	1	RM1061、RM212	16	0.12	[4]
qLWR5	谷粒长宽比	5	RM598、RM3351	20	0.2	[4]
qLWR9	谷粒长宽比	9	RM3919、M1099	11	0.21	[4]
qGLW1	谷粒长宽比	1	RM212	10	0.13	[43]
qGW1	千粒重	1	RM306	14	0.95	[44]
qGW2	千粒重	2	RM318	15	1.70	[44]
qGW4-1	千粒重	4	RM564	38	1.48	[44]
qGW4	千粒重	4	RM335	13	1.64	[44]
qGW6	千粒重	6	RM253	13	0.89	[44]
qGW9	千粒重	9	RM219	11	0.95	[44]
qGW10	千粒重	10	RM271	11	0.91	[44]
qGW12	千粒重	12	RM235	27	3.15	[44]
qYP8	每穗粒重	8	RM337	21	1.43	[44]
qGY3	单株产量	3	OSR31	13	8	[44]
qGY4	单株产量	4	RM273	23	13.47	[44]
qNPR12	净光合速率	12	RM453	11	11.28	[44]
qSSH4	落粒性	4	RM131	44	78.59	[45]
qAW8	芒性	8	RM308	18	2.07	[45]
SHA1	落粒性	4	RM6441、M1113	—	—	[46]
LABA1	芒长	4	Seq3、RM17242	—	—	[47]
OsLG1	散穗性状	4	M5、M6	—	—	[48]
PROG1	匍匐茎	7	pr5、pr7	—	—	[52]
hwi-1	杂种劣势	11	InDel-3、MG17	—	—	[51]

性状	杂交组合	等位基因为正效的QTL数量		参考文献
性状	杂交组合	普通野生稻	栽培稻	参考文献
出糙率	元江普通野生稻/特青	0	3	[5]
整精米率	元江普通野生稻/特青	0	1	[5]
垩白粒率	元江普通野生稻/特青	1	4	[5]
垩白度	元江普通野生稻/特青	1	2	[5]
籽粒储存蛋白	元江普通野生稻/特青	7	7	[60]

品种	HEN11	SCYC-6	YN7	YN11	FUJ	YN24
Y17	R	R	R	R	MR	R
Y99	R	R	R	R	MR	R
Y123	MR	MS	MR	R	MR	MR
Y201	R	MR	R	R	MR	MR
Y207	R	R	R	R	MR	R
Y235	MR	R	R	R	MR	R
Y252	R	R	R	R	R	R
Y253	R	R	R	R	MR	R
Y260	R	R	MR	R	R	MR
Y265	R	R	R	MS	R	R
Y273	R	MS	MR	R	MR	MR
Y295	R	R	R	MS	R	R