Current Biotechnology ›› 2022, Vol. 12 ›› Issue (5): 705-710.DOI: 10.19586/j.2095-2341.2022.0037
• Reviews • Previous Articles Next Articles
Received:2022-03-17
Accepted:2022-05-05
Online:2022-09-25
Published:2022-09-30
Contact:
Liang CHEN
通讯作者:
陈亮
作者简介:乔朝辉 E-mail:18710663466@163.com;
基金资助:CLC Number:
Zhaohui QIAO, Liang CHEN. Dynamic Regulation and Physiological Role of Promoter-proximal Pause/Release of RNA Polymerase Ⅱ: a Review[J]. Current Biotechnology, 2022, 12(5): 705-710.
乔朝辉, 陈亮. RNA聚合酶Ⅱ启动子近端暂停/释放的动态调控及生理作用研究进展[J]. 生物技术进展, 2022, 12(5): 705-710.
| 1 | SCHIER A C, TAATJES D J. Structure and mechanism of the RNA polymerase Ⅱ transcription machinery[J]. Genes Dev., 2020, 34(7-8): 465-488. |
| 2 | CORE L, ADELMAN K. Promoter-proximal pausing of RNA polymerase Ⅱ: A nexus of gene regulation[J]. Genes Dev., 2019, 33(15-16): 960-982. |
| 3 | PROUDFOOT N J. Transcriptional termination in mammals: Stopping the RNA polymerase Ⅱ juggernaut[J/OL]. Science, 2016, 352(6291): aad9926[2022-06-25]. . |
| 4 | ADELMAN K, LIS J T. Promoter-proximal pausing of RNA polymerase Ⅱ: emerging roles in metazoans[J]. Nat. Rev. Genet., 2012, 13(10): 720-731. |
| 5 | YAMAGUCHI Y, SHIBATA H, HANDA H. Transcription elongation factors DSIF and NELF: promoter-proximal pausing and beyond[J]. Biochim. Biophys. Acta, 2013, 1829(1): 98-104. |
| 6 | VOS S M, FARNUNG L, URLAUB H, et al.. Structure of paused transcription complex Pol Ⅱ-DSIF-NELF[J]. Nature, 2018, 560(7720): 601-606. |
| 7 | AOI Y, SMITH E R, SHAH A P, et al.. NELF Regulates a promoter-proximal step distinct from RNA Pol Ⅱ pause-release[J]. Mol. Cell, 2020, 78(2): 261-274. |
| 8 | CHENG B, LI T, RAHL P B, et al.. Functional association of Gdown1 with RNA polymerase Ⅱ poised on human genes[J]. Mol Cell, 2012, 45(1): 38-50. |
| 9 | LEE C, LI X, HECHMER A, et al.. NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila[J]. Mol. Cell Biol., 2008, 28(10): 3290-300. |
| 10 | CHEN F X, WOODFIN A R, GARDINI A, et al.. PAF1, a molecular regulator of promoter-proximal pausing by RNA polymerase Ⅱ[J]. Cell, 2015, 162(5): 1003-1015. |
| 11 | YU M, YANG W, NI T, et al.. RNA polymerase Ⅱ-associated factor 1 regulates the release and phosphorylation of paused RNA polymerase Ⅱ[J]. Science, 2015, 350(6266): 1383-1386. |
| 12 | FANT C B, LEVANDOWSKI C B, GUPTA K, et al.. TFⅡD Enables RNA polymerase Ⅱ promoter-proximal pausing[J]. Mol. Cell, 2020, 78(4): 785-793. |
| 13 | CHEN F X, SMITH E R, SHILATIFARD A. Born to run: control of transcription elongation by RNA polymerase Ⅱ[J]. Nat. Rev. Mol. Cell Biol., 2018, 19(7): 464-478. |
| 14 | LI Y, LIU M, CHEN L F, et al.. P-TEFb: finding its ways to release promoter-proximally paused RNA polymerase Ⅱ[J]. Transcription, 2018, 9(2): 88-94. |
| 15 | JI X, ZHOU Y, PANDIT S, et al.. SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase[J]. Cell, 2013, 153(4): 855-868. |
| 16 | CALO E, FLYNN R A, MARTIN L, et al.. RNA helicase DDX21 coordinates transcription and ribosomal RNA processing[J]. Nature, 2015, 518(7538): 249-253. |
| 17 | KANNO T, KANNO Y, LEROY G, et al.. BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones[J]. Nat. Struct. Mol. Biol., 2014, 21(12): 1047-1057. |
| 18 | KOMARNITSKY P, CHO E J, BURATOWSKI S. Different phosphorylated forms of RNA polymerase Ⅱ and associated mRNA processing factors during transcription[J]. Genes Dev., 2000, 14(19): 2452-2460. |
| 19 | ADELMAN K, MARR M T, WERNER J, et al.. Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFⅡS[J]. Mol. Cell, 2005, 17(1): 103-112. |
| 20 | YADAV D, GHOSH K, BASU S, et al.. Multivalent role of human TFⅡD in recruiting elongation components at the promoter-proximal region for transcriptional control[J]. Cell Rep., 2019, 26(5): 1303-1317. |
| 21 | RAHL P B, LIN C Y, SEILA A C, et al.. c-Myc regulates transcriptional pause release[J]. Cell, 2010, 141(3): 432-445. |
| 22 | STEINPARZER I, SEDLYAROV V, RUBIN J D, et al.. transcriptional responses to IFN-gamma require mediator kinase-dependent pause release and mechanistically distinct CDK8 and CDK19 functions[J]. Mol. Cell, 2019, 76(3): 485-499. |
| 23 | DONNER A J, EBMEIER C C, TAATJES D J, et al.. CDK8 is a positive regulator of transcriptional elongation within the serum response network[J]. Nat. Struct. Mol. Biol., 2010, 17(2): 194-201. |
| 24 | MCNAMARA R P, REEDER J E, MCMILLAN E A, et al.. KAP1 recruitment of the 7SK snRNP complex to promoters enables transcription elongation by RNA polymerase Ⅱ[J]. Mol. Cell, 2016, 61(1): 39-53. |
| 25 | BARBORIC M, NISSEN R M, KANAZAWA S, et al.. NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase Ⅱ[J]. Mol. Cell, 2001, 8(2): 327-337. |
| 26 | EBERHARDY S R, FARNHAM P J. c-Myc mediates activation of the cad promoter via a post-RNA polymerase Ⅱ recruitment mechanism[J]. J. Biol. Chem., 2001, 276(51): 48562-48571. |
| 27 | LUECKE H F, YAMAMOTO K R. The glucocorticoid receptor blocks P-TEFb recruitment by NFkappaB to effect promoter-specific transcriptional repression[J]. Genes Dev., 2005, 19(9): 1116-1127. |
| 28 | OVEN I, BRDICKOVA N, KOHOUTEK J, et al.. AIRE recruits P-TEFb for transcriptional elongation of target genes in medullary thymic epithelial cells[J]. Mol. Cell Biol., 2007, 27(24): 8815-8823. |
| 29 | GILMOUR D S, LIS J T. RNA polymerase Ⅱ interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells[J]. Mol Cell Biol, 1986, 6(11): 3984-3989. |
| 30 | ZEITLINGER J, STARK A, KELLIS M, et al.. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo[J]. Nat. Genet., 2007, 39(12): 1512-1516. |
| 31 | SHAO W, ALCANTARA S G, ZEITLINGER J. Reporter-ChIP-nexus reveals strong contribution of the Drosophila initiator sequence to RNA polymerase pausing[J/OL]. Elife, 2019, 8:e41461[2022-06-25]. . |
| 32 | CHEN K, JOHNSTON J, SHAO W, et al.. A global change in RNA polymerase Ⅱ pausing during the Drosophila midblastula transition [J/OL]. Elife, 2013, 2: e00861[2022-06-25]. . |
| 33 | BOETTIGER A N, LEVINE M. Synchronous and stochastic patterns of gene activation in the Drosophila embryo[J]. Science, 2009, 325(5939): 471-473. |
| 34 | JENNINGS B H, SHAH S, YAMAGUCHI Y, et al.. Locus-specific requirements for Spt5 in transcriptional activation and repression in Drosophila [J]. Curr. Biol., 2004, 14(18): 1680-1684. |
| 35 | WANG X, HANG S, PRAZAK L, et al.. NELF potentiates gene transcription in the Drosophila embryo[J/OL]. PLoS ONE, 2010, 5(7): e11498[2022-06-15]. . |
| 36 | AMLEH A, NAIR S J, SUN J, et al.. Mouse cofactor of BRCA1 (Cobra1) is required for early embryogenesis[J/OL]. PLoS ONE, 2009, 4(4): e5034[2022-06-25]. . |
| 37 | LAGHA M, BOTHMA J P, ESPOSITO E, et al.. Paused Pol Ⅱ coordinates tissue morphogenesis in the Drosophila embryo[J]. Cell, 2013, 153(5): 976-987. |
| 38 | LIU X, GOGATE A A, TASTEMEL M, et al.. Dynamic change of transcription pausing through modulating NELF protein stability regulates granulocytic differentiation[J]. Blood Adv., 2017, 1(18): 1358-1367. |
| 39 | GUO S, YAMAGUCHI Y, SCHILBACH S, et al.. A regulator of transcriptional elongation controls vertebrate neuronal development[J]. Nature, 2000, 408(6810): 366-369. |
| 40 | GATES L A, SHI J, ROHIRA A D, et al.. Acetylation on histone H3 lysine 9 mediates a switch from transcription initiation to elongation[J]. J. Biol. Chem., 2017, 292(35): 14456-14472. |
| 41 | ETCHEGARAY J P, ZHONG L, LI C, et al.. The histone deacetylase SIRT6 restrains transcription elongation via promoter-proximal pausing[J]. Mol. Cell, 2019, 75(4): 683-699. |
| 42 | VAID R, WEN J, MANNERVIK M. Release of promoter-proximal paused Pol Ⅱ in response to histone deacetylase inhibition[J]. Nucl. Acids Res., 2020, 48(9): 4877-4890. |
| 43 | HUANG K L, JEE D, STEIN C B, et al.. Integrator recruits protein phosphatase 2A to prevent pause release and facilitate transcription termination[J]. Mol. Cell, 2020, 80(2): 345-358. |
| 44 | SHRESTHA P, XIAO S, DHAKAL S, et al.. Nascent RNA transcripts facilitate the formation of G-quadruplexes[J]. Nucl. Acids Res., 2014, 42(11): 7236-7346. |
| 45 | CHEN L, CHEN J Y, ZHANG X, et al.. R-ChIP using inactive RNase H reveals dynamic coupling of r-loops with transcriptional pausing at gene promoters[J]. Mol. Cell, 2017, 68(4): 745-757. |
| 46 | ZHANG X, CHIANG H C, WANG Y, et al.. Attenuation of RNA polymerase Ⅱ pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis[J/OL]. Nat. Commun., 2017, 8: 15908 [2022-06-15]. . |
| 47 | CHEN L, CHEN J Y, HUANG Y J, et al.. The augmented R-Loop Is a unifying mechanism for myelodysplastic syndromes induced by high-risk splicing factor mutations[J]. Mol. Cell, 2018, 69(3): 412-425. |
| 48 | JAUREGUI-LOZANO J, ESCOBEDO S, EASTON A, et al.. Proper control of R-loop homeostasis is required for maintenance of gene expression and neuronal function during aging[J/OL]. Aging Cell, 2022, 21(2): e13554 [2022-06-15]. . |
| 49 | ALECKI C, CHIWARA V, SANZ L A, et al.. RNA-DNA strand exchange by the Drosophila polycomb complex PRC2[J/OL]. Nat. Commun., 2020, 11(1): 1781 [2022-06-15]. . |
| [1] | Xiaoyuan WANG, Xi BAI, Jiansheng WANG, Hongzhi CUI. An Overview on Fiber Improvement Transgenic Cotton Studies [J]. Current Biotechnology, 2025, 15(1): 11-18. |
| [2] | Yu LIU, Tian LI, Yongjun WEI, Ying WANG, Gen ZOU. The Prospect of Synthetic Biology in the New Track of Edible Fungi [J]. Current Biotechnology, 2024, 14(6): 886-891. |
| [3] | Huanzhen WU, Ye YANG, Xiuming CUI, Yuan LIU. The Current Status and Improvement Strategies of Agricultural Biological Control Technology [J]. Current Biotechnology, 2024, 14(5): 697-711. |
| [4] | Hao JIANG, Hesheng YANG, Bo WANG, Zaiquan CHENG, Huanzhi MENG, Jiyun ZHOU, Yun ZHANG, Suqin XIAO, Li LIU, Fuyou YIN, Qiaofang ZHONG, Jinlu LI, Dunyu ZHANG, Ling CHEN. Exploration and Utilization of the Excellent Characteristics and Favorable Genes of Yunnan Common Wild Rice(Oryza rufipogon Griff.) in the Past 40 Years [J]. Current Biotechnology, 2024, 14(5): 724-737. |
| [5] | Rui BI, Jiangbo WU, Chunjing MA. Research Progress on Cell Surface Modification Strategies Based on Non-genetic Engineering Technologies [J]. Current Biotechnology, 2024, 14(4): 555-565. |
| [6] | Zhuojing SUN, Daoqing XU, Qiaoling TANG, Wei WANG. Current Situation of Safety Management and Development of Genetically Modified Organisms (GMOs) in South Korea [J]. Current Biotechnology, 2024, 14(3): 360-367. |
| [7] | Jiaxin QIN, Baozhen YAO. Research Progress on Neurotoxicity of Antibiotics [J]. Current Biotechnology, 2023, 13(3): 359-365. |
| [8] | Zijia LIU, Xue JIANG, Yang YI, Meng WANG, Cheng MA, Yifei SONG, Fei XIE. Research Progress on the Relationship Between Hydrogen and Intestinal Flora [J]. Current Biotechnology, 2022, 12(6): 847-852. |
| [9] | Min LIN, Bin YAO. Strengthening Innovation in Synthetic Biotechnology and Leading the Leapfrog Development of Modern Agriculture [J]. Current Biotechnology, 2022, 12(3): 321-324. |
| [10] | Xiangyang WANG, Anjun LIU, Jing ZHAO. Effects of Dexmedetomidine on Offspring Development, Spatial Learning and Memory Ability of Pregnancy Rats with Chronic Stress Depression [J]. Current Biotechnology, 2022, 12(1): 135-141. |
| [11] | Yage ZHANG, Yu PANG, Wei ZHANG, Zhengfu ZHOU. Global Patent Analysis of Lipase Development Trends [J]. Current Biotechnology, 2021, 11(6): 749-757. |
| [12] | WANG Huan§, NIU Kun§, JIANG Yifan, DONG Jing*. Charge Heterogeneity and Process Control of Recombinant Monoclonal Antibodies [J]. Curr. Biotech., 2020, 10(5): 456-462. |
| [13] | YAO Jiawei, QIU Bo*. Progress on Effect of Transforming Growth Factor 5 in Developmental Dysplasia of the Hip [J]. Curr. Biotech., 2020, 10(4): 345-350. |
| [14] | XING Lijuan1,LIU Yueping2*,WANG Lei1,XU Miaoyun1*. Research Progress of miRNA Involved in Regulation of Plant Embryo and Endosperm Development [J]. Curr. Biotech., 2020, 10(2): 109-116. |
| [15] | ZHANG Zaibao1,2§, ZHAO Hai1§, HU Menghui1, DENG Lijun1, WANG Qi1, LI Jiuli1, YUAN Hongyu1,2. Application Progress of Omics in the Research of Anther Development Ⅰ: Transcriptomics [J]. Curr. Biotech., 2019, 9(5): 433-439. |
| Viewed | ||||||
|
Full text |
|
|||||
|
Abstract |
|
|||||
